BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche06g030400.1.mRNA1.mrna1gene=Erche06g030400.1.mRNA1               38.1    4e-04
Erche02g014250.1.mRNA1.mrna1gene=Erche02g014250.1.mRNA1               30.7    0.065
Erche01g045580.1.mRNA1.mrna1gene=Erche01g045580.1.mRNA1               30.7    0.065
Erche08g012310.1.mRNA1.mrna1gene=Erche08g012310.1.mRNA1               27.0    0.84 
Erche07g029700.1.mRNA1.mrna1gene=Erche07g029700.1.mRNA1               27.0    0.84 
Erche07g030730.1.mRNA1.mrna1gene=Erche07g030730.1.mRNA1               27.0    0.84 
Erche05g015230.1.mRNA1.mrna1gene=Erche05g015230.1.mRNA1               27.0    0.84 
Erche04g032390.1.mRNA1.mrna1gene=Erche04g032390.1.mRNA1               27.0    0.84 
Erche03g020920.1.mRNA1.mrna1gene=Erche03g020920.1.mRNA1               27.0    0.84 
Erche02g013320.1.mRNA1.mrna1gene=Erche02g013320.1.mRNA1               27.0    0.84 
Erche02g012760.1.mRNA1.mrna1gene=Erche02g012760.1.mRNA1               27.0    0.84 
Erche01g029540.1.mRNA1.mrna1gene=Erche01g029540.1.mRNA1               27.0    0.84 
Erche01g036270.1.mRNA1.mrna1gene=Erche01g036270.1.mRNA1               27.0    0.84 
Erche01g042850.1.mRNA1.mrna1gene=Erche01g042850.1.mRNA1               27.0    0.84 


>Erche06g030400.1.mRNA1.mrna1 gene=Erche06g030400.1.mRNA1
Length=2955

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     CAATGTTCTTCATATTGAAT  20
             ||||||||||||||||||||
Sbjct  1525  CAATGTTCTTCATATTGAAT  1506


>Erche02g014250.1.mRNA1.mrna1 gene=Erche02g014250.1.mRNA1
Length=396

 Score = 30.7 bits (16),  Expect = 0.065
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  4    TGTTCTTCATATTGAA  19
            ||||||||||||||||
Sbjct  247  TGTTCTTCATATTGAA  232


>Erche01g045580.1.mRNA1.mrna1 gene=Erche01g045580.1.mRNA1
Length=588

 Score = 30.7 bits (16),  Expect = 0.065
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  2    AATGTTCTTCATATTGAAT  20
            ||| |||||||||||||||
Sbjct  351  AATCTTCTTCATATTGAAT  333


>Erche08g012310.1.mRNA1.mrna1 gene=Erche08g012310.1.mRNA1
Length=5100

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1     CAATGTTCTTCATATTGAAT  20
             |||||||||| || ||||||
Sbjct  3619  CAATGTTCTTGATGTTGAAT  3600


>Erche07g029700.1.mRNA1.mrna1 gene=Erche07g029700.1.mRNA1
Length=4431

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  2    AATGTTCTTCATAT  15
            ||||||||||||||
Sbjct  171  AATGTTCTTCATAT  158


>Erche07g030730.1.mRNA1.mrna1 gene=Erche07g030730.1.mRNA1
Length=4701

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  3     ATGTTCTTCATATT  16
             ||||||||||||||
Sbjct  2229  ATGTTCTTCATATT  2216


>Erche05g015230.1.mRNA1.mrna1 gene=Erche05g015230.1.mRNA1
Length=339

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1   CAATGTTCTTCATATTGAAT  20
           ||||| |||||| |||||||
Sbjct  15  CAATGATCTTCAGATTGAAT  34


>Erche04g032390.1.mRNA1.mrna1 gene=Erche04g032390.1.mRNA1
Length=2076

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  3    ATGTTCTTCATATTGAA  19
            |||||||||||| ||||
Sbjct  450  ATGTTCTTCATACTGAA  434


>Erche03g020920.1.mRNA1.mrna1 gene=Erche03g020920.1.mRNA1
Length=909

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  6    TTCTTCATATTGAA  19
            ||||||||||||||
Sbjct  635  TTCTTCATATTGAA  648


>Erche02g013320.1.mRNA1.mrna1 gene=Erche02g013320.1.mRNA1
Length=1476

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  1    CAATGTTCTTCATA  14
            ||||||||||||||
Sbjct  914  CAATGTTCTTCATA  927


>Erche02g012760.1.mRNA1.mrna1 gene=Erche02g012760.1.mRNA1
Length=534

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  3   ATGTTCTTCATATT  16
           ||||||||||||||
Sbjct  81  ATGTTCTTCATATT  68


>Erche01g029540.1.mRNA1.mrna1 gene=Erche01g029540.1.mRNA1
Length=5136

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  1     CAATGTTCTTCATATTG  17
             |||||||||||||| ||
Sbjct  2722  CAATGTTCTTCATACTG  2706


>Erche01g036270.1.mRNA1.mrna1 gene=Erche01g036270.1.mRNA1
Length=4296

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 19/21 (90%), Gaps = 1/21 (5%)
 Strand=Plus/Minus

Query  1    CAAT-GTTCTTCATATTGAAT  20
            |||| |||||||| |||||||
Sbjct  525  CAATGGTTCTTCAAATTGAAT  505


>Erche01g042850.1.mRNA1.mrna1 gene=Erche01g042850.1.mRNA1
Length=2877

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  4     TGTTCTTCATATTG  17
             ||||||||||||||
Sbjct  1695  TGTTCTTCATATTG  1708



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5