BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche04g006870.1.mRNA1.mrna1gene=Erche04g006870.1.mRNA1               38.1    4e-04
Erche04g014435.1.mRNA1.mrna1gene=Erche04g014435.1.mRNA1               28.8    0.23 
Erche07g000980.1.mRNA1.mrna1gene=Erche07g000980.1.mRNA1               27.0    0.84 
Erche03g023990.2.mRNA1.mrna1gene=Erche03g023990.2.mRNA1               27.0    0.84 
Erche07g022900.1.mRNA1.mrna1gene=Erche07g022900.1.mRNA1               25.1    3.0  
Erche01g002260.1.mRNA1.mrna1gene=Erche01g002260.1.mRNA1               25.1    3.0  
Erche01g032720.1.mRNA1.mrna1gene=Erche01g032720.1.mRNA1               25.1    3.0  


>Erche04g006870.1.mRNA1.mrna1 gene=Erche04g006870.1.mRNA1
Length=2760

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1   GTTGGGTCTCTGCAAGTGGG  20
           ||||||||||||||||||||
Sbjct  3   GTTGGGTCTCTGCAAGTGGG  22


>Erche04g014435.1.mRNA1.mrna1 gene=Erche04g014435.1.mRNA1
Length=56

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  6   GTCTCTGCAAGTGGG  20
           |||||||||||||||
Sbjct  8   GTCTCTGCAAGTGGG  22


>Erche07g000980.1.mRNA1.mrna1 gene=Erche07g000980.1.mRNA1
Length=3042

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  5     GGTCTCTGCAAGTG  18
             ||||||||||||||
Sbjct  1043  GGTCTCTGCAAGTG  1056


>Erche03g023990.2.mRNA1.mrna1 gene=Erche03g023990.2.mRNA1
Length=3543

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Minus

Query  3     TGGGTCTCTGCAAG  16
             ||||||||||||||
Sbjct  2270  TGGGTCTCTGCAAG  2257


>Erche07g022900.1.mRNA1.mrna1 gene=Erche07g022900.1.mRNA1
Length=2790

 Score = 25.1 bits (13),  Expect = 3.0
 Identities = 13/13 (100%), Gaps = 0/13 (0%)
 Strand=Plus/Plus

Query  6     GTCTCTGCAAGTG  18
             |||||||||||||
Sbjct  1105  GTCTCTGCAAGTG  1117


>Erche01g002260.1.mRNA1.mrna1 gene=Erche01g002260.1.mRNA1
Length=879

 Score = 25.1 bits (13),  Expect = 3.0
 Identities = 13/13 (100%), Gaps = 0/13 (0%)
 Strand=Plus/Plus

Query  5    GGTCTCTGCAAGT  17
            |||||||||||||
Sbjct  376  GGTCTCTGCAAGT  388


>Erche01g032720.1.mRNA1.mrna1 gene=Erche01g032720.1.mRNA1
Length=1350

 Score = 25.1 bits (13),  Expect = 3.0
 Identities = 15/16 (94%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  3    TGGGTCTCTGCAAGTG  18
            ||| ||||||||||||
Sbjct  688  TGGTTCTCTGCAAGTG  703



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5