BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Eche_v2.0_cds.fasta
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche02g042820.1.mRNA1.mrna1gene=Erche02g042820.1.mRNA1               38.1    4e-04
Erche02g020330.1.mRNA1.mrna1gene=Erche02g020330.1.mRNA1               28.8    0.23 
Erche07g027690.1.mRNA1.mrna1gene=Erche07g027690.1.mRNA1               27.0    0.84 
Erche05g031560.1.mRNA1.mrna1gene=Erche05g031560.1.mRNA1               27.0    0.84 
Erche05g031530.1.mRNA1.mrna1gene=Erche05g031530.1.mRNA1               27.0    0.84 
Erche05g031490.1.mRNA1.mrna1gene=Erche05g031490.1.mRNA1               27.0    0.84 
Erche05g024270.1.mRNA1.mrna1gene=Erche05g024270.1.mRNA1               27.0    0.84 
Erche02g027210.1.mRNA1.mrna1gene=Erche02g027210.1.mRNA1               27.0    0.84 


>Erche02g042820.1.mRNA1.mrna1 gene=Erche02g042820.1.mRNA1
Length=1626

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1    ACCAAAGGGAGTGATCACGC  20
            ||||||||||||||||||||
Sbjct  444  ACCAAAGGGAGTGATCACGC  425


>Erche02g020330.1.mRNA1.mrna1 gene=Erche02g020330.1.mRNA1
Length=12522

 Score = 28.8 bits (15),  Expect = 0.23
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  1     ACCAAAGGGAGTGAT  15
             |||||||||||||||
Sbjct  4834  ACCAAAGGGAGTGAT  4848


>Erche07g027690.1.mRNA1.mrna1 gene=Erche07g027690.1.mRNA1
Length=2151

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 16/17 (94%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  1     ACCAAAGGGAGTGATCA  17
             |||||| ||||||||||
Sbjct  1833  ACCAAATGGAGTGATCA  1849


>Erche05g031560.1.mRNA1.mrna1 gene=Erche05g031560.1.mRNA1
Length=1503

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  4    AAAGGGAGTGATCA  17
            ||||||||||||||
Sbjct  945  AAAGGGAGTGATCA  958


>Erche05g031530.1.mRNA1.mrna1 gene=Erche05g031530.1.mRNA1
Length=753

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  4    AAAGGGAGTGATCA  17
            ||||||||||||||
Sbjct  519  AAAGGGAGTGATCA  532


>Erche05g031490.1.mRNA1.mrna1 gene=Erche05g031490.1.mRNA1
Length=1503

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  4    AAAGGGAGTGATCA  17
            ||||||||||||||
Sbjct  945  AAAGGGAGTGATCA  958


>Erche05g024270.1.mRNA1.mrna1 gene=Erche05g024270.1.mRNA1
Length=1776

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  2    CCAAAGGGAGTGAT  15
            ||||||||||||||
Sbjct  658  CCAAAGGGAGTGAT  671


>Erche02g027210.1.mRNA1.mrna1 gene=Erche02g027210.1.mRNA1
Length=2001

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  2    CCAAAGGGAGTGAT  15
            ||||||||||||||
Sbjct  712  CCAAAGGGAGTGAT  725



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Eche_v2.0_cds.fasta
    Posted date:  Jul 17, 2024  4:51 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5