BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Erysimum V2.0 CDS
           30,099 sequences; 37,600,338 total letters



Query= Untitled_sequence

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Erche04g006870.1.mRNA1.mrna1gene=Erche04g006870.1.mRNA1               38.1    4e-04
Erche05g030540.1.mRNA1.mrna1gene=Erche05g030540.1.mRNA1               32.5    0.018
Erche04g006780.1.mRNA1.mrna1gene=Erche04g006780.1.mRNA1               32.5    0.018
Erche04g006910.1.mRNA1.mrna1gene=Erche04g006910.1.mRNA1               32.5    0.018
Erche07g022060.1.mRNA1.mrna1gene=Erche07g022060.1.mRNA1               27.0    0.84 
Erche06g023060.1.mRNA1.mrna1gene=Erche06g023060.1.mRNA1               27.0    0.84 
Erche04g008400.1.mRNA1.mrna1gene=Erche04g008400.1.mRNA1               27.0    0.84 


>Erche04g006870.1.mRNA1.mrna1 gene=Erche04g006870.1.mRNA1
Length=2760

 Score = 38.1 bits (20),  Expect = 4e-04
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    AAGACTGCCAGTTTTTTCAG  20
            ||||||||||||||||||||
Sbjct  798  AAGACTGCCAGTTTTTTCAG  817


 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1     AAGACTGCCAGTTTTTTCAG  20
             |||||| |||||||||||||
Sbjct  2193  AAGACTCCCAGTTTTTTCAG  2212


>Erche05g030540.1.mRNA1.mrna1 gene=Erche05g030540.1.mRNA1
Length=540

 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1   AAGACTGCCAGTTTTTTCAG  20
           ||||||||||||||| ||||
Sbjct  21  AAGACTGCCAGTTTTCTCAG  40


>Erche04g006780.1.mRNA1.mrna1 gene=Erche04g006780.1.mRNA1
Length=1818

 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    AAGACTGCCAGTTTTTTCAG  20
            ||||||||||||||| ||||
Sbjct  909  AAGACTGCCAGTTTTCTCAG  928


>Erche04g006910.1.mRNA1.mrna1 gene=Erche04g006910.1.mRNA1
Length=2280

 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    AAGACTGCCAGTTTTTTCAG  20
            ||||||||||||||| ||||
Sbjct  783  AAGACTGCCAGTTTTCTCAG  802


 Score = 32.5 bits (17),  Expect = 0.018
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1     AAGACTGCCAGTTTTTTCAG  20
             ||||||||||||||| ||||
Sbjct  2088  AAGACTGCCAGTTTTCTCAG  2107


>Erche07g022060.1.mRNA1.mrna1 gene=Erche07g022060.1.mRNA1
Length=816

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    AAGACTGCCAGTTTTTTCAG  20
            |||||||||||| || ||||
Sbjct  204  AAGACTGCCAGTATTCTCAG  223


>Erche06g023060.1.mRNA1.mrna1 gene=Erche06g023060.1.mRNA1
Length=1098

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 18/20 (90%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1    AAGACTGCCAGTTTTTTCAG  20
            |||||| |||||||| ||||
Sbjct  909  AAGACTCCCAGTTTTCTCAG  928


>Erche04g008400.1.mRNA1.mrna1 gene=Erche04g008400.1.mRNA1
Length=3777

 Score = 27.0 bits (14),  Expect = 0.84
 Identities = 19/21 (90%), Gaps = 1/21 (5%)
 Strand=Plus/Plus

Query  1     AAG-ACTGCCAGTTTTTTCAG  20
             ||| |||||||||| ||||||
Sbjct  2309  AAGAACTGCCAGTTGTTTCAG  2329



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 111265965


  Database: Erysimum V2.0 CDS
    Posted date:  Oct 20, 2020  1:06 PM
  Number of letters in database: 37,600,338
  Number of sequences in database:  30,099



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5